Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs28540229 chr1:247179076 A/G 1.07E-7 181 13.22 20.3 3.87 KM Plot
ESCA rs28573826 chr12:123875650 C/T 6.07E-7 182 13.1 15.57 2.7 KM Plot
ESCA rs2857663 chr12:52713088 C/T 9.93E-5 184 13.03 16.53 7.67 KM Plot
ESCA rs28614003 chr1:247179352 G/A 1.07E-7 181 13.22 20.3 3.87 KM Plot
ESCA rs28649096 chr12:123864606 G/C 3.91E-7 182 13.03 19.6 2.7 KM Plot
ESCA rs28706442 chr8:41369740 G/A 1.58E-7 183 13.02 19.27 2.7 KM Plot
ESCA rs2887275 chr1:3695111 G/C 2.49E-12 179 13.07 16.67 2.27 KM Plot
ESCA rs292237 chr6:90528036 T/A 7.42E-5 181 12.87 15.9 4.97 KM Plot
ESCA rs3112542 chr16:26259306 T/G 3.75E-5 176 10.1 13.63 13.37 KM Plot
ESCA rs33910087 chr3:46009487 G/A 0 182 13.33 13.1 0.8 KM Plot
ESCA rs34012108 chr16:1505932 G/A 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs34044394 chr3:46029098 CA/C 0 182 13.37 13.1 0.8 KM Plot
ESCA rs34121825 chr1:3695900 C/T 2.52E-12 180 13.07 16.4 2.27 KM Plot
ESCA rs34158222 chr16:1505370 G/A 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs34183139 chr16:1517090 T/C 1.39E-8 183 13.37 13.1 4 KM Plot